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SNPlocs.Hsapiens.dbSNP144.GRCh38

This is the development version of SNPlocs.Hsapiens.dbSNP144.GRCh38; for the stable release version, see SNPlocs.Hsapiens.dbSNP144.GRCh38.

SNP locations for Homo sapiens (dbSNP Build 144)


Bioconductor version: Development (3.19)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: H. Pagès <hpages at fredhutch.org>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP144.GRCh38")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SNPlocs.Hsapiens.dbSNP144.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.20
License Artistic-2.0
Depends BSgenome(>= 1.43.4)
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
System Requirements
URL
See More
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg38
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me BSgenome, GenomicFeatures, MungeSumstats, raer, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.20.tar.gz
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Package Short Url https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP144.GRCh38/
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