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HiCDataLymphoblast

This is the development version of HiCDataLymphoblast; for the stable release version, see HiCDataLymphoblast.

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009


Bioconductor version: Development (3.20)

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <b.mifsud at qmul.ac.uk>

Citation (from within R, enter citation("HiCDataLymphoblast")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HiCDataLymphoblast")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataLymphoblast")
package_vignettes.pdf PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, Homo_sapiens_Data
Version 1.41.0
License GPL-3
Depends
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Suggests ShortRead
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiCDataLymphoblast_1.41.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HiCDataLymphoblast
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiCDataLymphoblast
Package Short Url https://bioconductor.org/packages/HiCDataLymphoblast/
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