ObMiTi
This is the development version of ObMiTi; for the stable release version, see ObMiTi.
Ob/ob Mice Data on Normal and High Fat Diet
Bioconductor version: Development (3.22)
The package provide RNA-seq count for 2 strains of mus musclus; Wild type and Ob/Ob. Each strain was divided into two groups, and each group received either chow diet or high fat diet. RNA expression was measured after 20 weeks in 7 tissues.
Author: Omar Elashkar [aut, cre]
, Mahmoud Ahmed [aut]
Maintainer: Omar Elashkar <omar.i.elashkar at gmail.com>
citation("ObMiTi")):
An, Seok H, Lee, Youl J, Choi, Bee E, Jeong (2020). “Caloric restriction reverses left ventricular hypertrophy through the regulation of cardiac iron homeostasis in impaired leptin signaling mice.” Scientific Reports, 10(1), 7176. 10.1038/s41598-020-64201-2.
Jeong, Hun J, Choi, Bee E, Jang, Min H, Ahn, Yu (2020). “The Role of SHIP1 on Apoptosis and Autophagy in the Adipose Tissue of Obese Mice.” International Journal of Molecular Sciences, 21(19), 7225. https://www.mdpi.com/1422-0067/21/19/7225.
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ObMiTi")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ObMiTi")| Using ObMiTi | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, GEO, RNASeqData |
| Version | 1.17.0 |
| License | GPL-3 |
| Depends | R (>= 4.1), SummarizedExperiment, ExperimentHub |
| Imports | |
| System Requirements | |
| URL | https://github.com/OmarElAshkar/ObMiTi |
| Bug Reports | https://github.com/OmarElAshkar/ObMiTi/issues |
See More
| Suggests | knitr, rmarkdown, BiocManager, GenomicFeatures, S4Vectors, devtools, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ObMiTi_1.17.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ObMiTi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ObMiTi |
| Package Short Url | https://bioconductor.org/packages/ObMiTi/ |
| Package Downloads Report | Download Stats |