TENxBUSData
This is the development version of TENxBUSData; for the stable release version, see TENxBUSData.
Single cell dataset from 10x in BUS format
Bioconductor version: Development (3.22)
Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.
Author: Lambda Moses [aut, cre]
Maintainer: Lambda Moses <dlu2 at caltech.edu>
citation("TENxBUSData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TENxBUSData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TENxBUSData")| Downloading BUS data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData |
| Version | 1.23.0 |
| License | BSD_2_clause + file LICENSE |
| Depends | |
| Imports | ExperimentHub, AnnotationHub, utils, BiocGenerics |
| System Requirements | |
| URL | https://github.com/BUStools/TENxBUSData |
| Bug Reports | https://github.com/BUStools/TENxBUSData/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BUSpaRse |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TENxBUSData_1.23.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TENxBUSData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TENxBUSData |
| Package Short Url | https://bioconductor.org/packages/TENxBUSData/ |
| Package Downloads Report | Download Stats |