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benchmarkfdrData2019

This is the development version of benchmarkfdrData2019; for the stable release version, see benchmarkfdrData2019.

Data and Benchmarking Results from Korthauer and Kimes et al. (2019)


Bioconductor version: Development (3.19)

Benchmarking results for experimental and simulated data sets used in Korthauer and Kimes et al. (2019) to compare methods for controlling the false discovery rate.

Author: Stephanie Hicks [aut, cre] , Keegan Korthauer [aut] , Patrick Kimes [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("benchmarkfdrData2019")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("benchmarkfdrData2019")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("benchmarkfdrData2019")
Exploring and updating FDR benchmarking results HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData
Version 1.17.0
License MIT + file LICENSE
Depends R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports utils
System Requirements
URL
Bug Reports https://github.com/stephaniehicks/benchmarkfdrData2019/issues
See More
Suggests rmarkdown, knitr, BiocStyle, testthat, SummarizedBenchmark, dplyr, ggplot2, rlang
Linking To
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Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package benchmarkfdrData2019_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/benchmarkfdrData2019
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/benchmarkfdrData2019
Package Short Url https://bioconductor.org/packages/benchmarkfdrData2019/
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