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curatedAdipoRNA

This is the development version of curatedAdipoRNA; for the stable release version, see curatedAdipoRNA.

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)


Bioconductor version: Development (3.19)

A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("curatedAdipoRNA")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("curatedAdipoRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoRNA")
Using curatedAdipoRNA HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, GEO, RNASeqData, SequencingData
Version 1.19.0
License GPL-3
Depends R (>= 3.6), SummarizedExperiment
Imports
System Requirements
URL https://github.com/MahShaaban/curatedAdipoRNA
Bug Reports https://github.com/MahShaaban/curatedAdipoRNA/issues
See More
Suggests knitr, rmarkdown, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2, S4Vectors
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedAdipoRNA_1.19.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/curatedAdipoRNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedAdipoRNA
Package Short Url https://bioconductor.org/packages/curatedAdipoRNA/
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