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furrowSeg

This is the development version of furrowSeg; for the stable release version, see furrowSeg.

Furrow Segmentation


Bioconductor version: Development (3.20)

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("furrowSeg")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("furrowSeg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("furrowSeg")
Supplementary Methods - Automatic generation of paper figures PDF R Script
Supplementary Methods - Example furrow segmentation PDF R Script
Reference Manual PDF

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue
Version 1.33.0
License Artistic-2.0
Depends R (>= 3.3), EBImage
Imports abind, dplyr, locfit, tiff
System Requirements
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Suggests BiocStyle, ggplot2, knitr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package furrowSeg_1.33.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/furrowSeg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/furrowSeg
Package Short Url https://bioconductor.org/packages/furrowSeg/
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