muscData

DOI: 10.18129/B9.bioc.muscData  

This is the development version of muscData; for the stable release version, see muscData.

Multi-sample multi-group scRNA-seq data

Bioconductor version: Development (3.18)

Data package containing a collection of multi-sample multi-group scRNA-seq datasets in SingleCellExperiment Bioconductor object format.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena.crowell at uzh.ch>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("muscData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscData")

 

HTML	R Script	Multi-sample multi-group scRNA-seq data
PDF		Reference Manual
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, ImmunoOncologyData, SingleCellData
Version	1.15.0
License	MIT + file LICENSE
Depends	R (>= 3.6), ExperimentHub, SingleCellExperiment
Imports	utils
LinkingTo
Suggests	BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix, matrixStats, methods, muscat, rmarkdown, R.utils, readxl, scater, scds, Seurat
SystemRequirements
Enhances
URL	https://github.com/HelenaLC/muscData
BugReports	https://github.com/HelenaLC/muscData/issues
Depends On Me
Imports Me
Suggests Me	glmGamPoi
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	muscData_1.15.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/muscData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/muscData
Package Short Url	https://bioconductor.org/packages/muscData/
Package Downloads Report	Download Stats