1 Introduction

This document explains the functionalities available in the a4Reporting package.

This package contains utility functions to enhance reporting of data for the Automated Affymetrix Array Analysis suite of packages.

2 Create an annotation table

The annotationTable function enhances the reporting of table of genes or gene ontology term.

3 Top table of classification objects

A few utility functions to enhances the reporting of top tables for glmnet, lognet, elnet, pam and pam classification confusion are available.

4 Appendix

4.1 Session information

## R version 4.4.0 alpha (2024-03-27 r86216)
## Platform: aarch64-apple-darwin20
## Running under: macOS Ventura 13.6.5
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib 
## LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0
## 
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## time zone: America/New_York
## tzcode source: internal
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] a4Reporting_1.52.0
## 
## loaded via a namespace (and not attached):
##  [1] digest_0.6.35   R6_2.5.1        fastmap_1.1.1   xfun_0.43      
##  [5] cachem_1.0.8    knitr_1.45      htmltools_0.5.8 rmarkdown_2.26 
##  [9] lifecycle_1.0.4 cli_3.6.2       xtable_1.8-4    sass_0.4.9     
## [13] jquerylib_0.1.4 compiler_4.4.0  tools_4.4.0     evaluate_0.23  
## [17] bslib_0.6.2     yaml_2.3.8      rlang_1.1.3     jsonlite_1.8.8