DOI: 10.18129/B9.bioc.ABSSeq    

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: Release (3.8)

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ABSSeq", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script ABSSeq
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, Software
Version 1.36.0
In Bioconductor since BioC 2.14 (R-3.1) (5 years)
License GPL (>= 3)
Depends R (>= 2.10), methods
Imports locfit, limma
Suggests edgeR
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package ABSSeq_1.36.0.tar.gz
Windows Binary ABSSeq_1.36.0.zip
Mac OS X 10.11 (El Capitan) ABSSeq_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ABSSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABSSeq
Package Short Url http://bioconductor.org/packages/ABSSeq/
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