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AIMS

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype


Bioconductor version: Release (3.18)

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Author: Eric R. Paquet, Michael T. Hallett

Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>

Citation (from within R, enter citation("AIMS")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AIMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AIMS")
AIMS An Introduction (HowTo) PDF R Script
Reference Manual PDF
README Text

Details

biocViews Classification, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends R (>= 2.10), e1071, Biobase
Imports
System Requirements
URL http://www.bci.mcgill.ca/AIMS
See More
Suggests breastCancerVDX, hgu133a.db, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me genefu
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AIMS_1.34.0.tar.gz
Windows Binary AIMS_1.34.0.zip
macOS Binary (x86_64) AIMS_1.34.0.tgz
macOS Binary (arm64) AIMS_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AIMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AIMS
Bioc Package Browser https://code.bioconductor.org/browse/AIMS/
Package Short Url https://bioconductor.org/packages/AIMS/
Package Downloads Report Download Stats