To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BEclear")

In most cases, you don't need to download the package archive at all.

BEclear

DOI: 10.18129/B9.bioc.BEclear    

Correct for batch effects in DNA methylation data

Bioconductor version: Release (3.6)

Provides some functions to detect and correct for batch effects in DNA methylation data. The core function "BEclear" is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.

Author: Markus Merl, Ruslan Akulenko

Maintainer: Markus Merl <beclear.package at gmail.com>

Citation (from within R, enter citation("BEclear")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BEclear")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEclear")

 

PDF R Script BEclear tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, DNAMethylation, Software
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL-2
Depends snowfall, Matrix
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BEclear_1.10.0.tar.gz
Windows Binary BEclear_1.10.0.zip
Mac OS X 10.11 (El Capitan) BEclear_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BEclear
Package Short Url http://bioconductor.org/packages/BEclear/
Package Downloads Report Download Stats

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