DeepBlueR

DOI: 10.18129/B9.bioc.DeepBlueR    

DeepBlueR

Bioconductor version: Release (3.7)

Accessing the DeepBlue Epigenetics Data Server through R.

Author: Felipe Albrecht, Markus List

Maintainer: Felipe Albrecht <felipe.albrecht at mpi-inf.mpg.de>, Markus List <markus.list at mpi-inf.mpg.de>

Citation (from within R, enter citation("DeepBlueR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeepBlueR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeepBlueR")

 

HTML R Script The DeepBlue epigenomic data server - R package
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, CpGIsland, DNAMethylation, DataImport, DataRepresentation, Epigenetics, GeneRegulation, GenomeAnnotation, Preprocessing, Software, ThirdPartyClient
Version 1.6.0
In Bioconductor since BioC 3.4 (R-3.3) (1.5 years)
License GPL (>=2.0)
Depends R (>= 3.3), XML, RCurl
Imports GenomicRanges, data.table, stringr, diffr, dplyr, methods, rjson, utils, R.utils, foreach, withr, rtracklayer, GenomeInfoDb, settings, filehash
LinkingTo
Suggests knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DeepBlueR_1.6.0.tar.gz
Windows Binary DeepBlueR_1.6.0.zip
Mac OS X 10.11 (El Capitan) DeepBlueR_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DeepBlueR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DeepBlueR
Package Short Url http://bioconductor.org/packages/DeepBlueR/
Package Downloads Report Download Stats

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