To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EnrichedHeatmap")

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EnrichedHeatmap

DOI: 10.18129/B9.bioc.EnrichedHeatmap    

Making Enriched Heatmaps

Bioconductor version: Release (3.6)

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("EnrichedHeatmap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EnrichedHeatmap")

Documentation

HTML R Script Compare row ordering methods
HTML R Script Make Enriched Heatmaps
HTML R Script Visualize Comprehensive Associations in Roadmap dataset
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, GenomeAnnotation, Sequencing, Software, Visualization
Version 1.9.1
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL (>= 2)
Depends R (>= 3.1.2), methods, grid, ComplexHeatmap(>= 1.15.2), GenomicRanges, IRanges, locfit
Imports matrixStats, stats, GetoptLong, Rcpp, utils
LinkingTo Rcpp
Suggests testthat (>= 0.3), knitr, markdown, circlize (>= 0.4.1), genefilter, RColorBrewer
SystemRequirements
Enhances
URL https://github.com/jokergoo/EnrichedHeatmap
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EnrichedHeatmap_1.9.1.tar.gz
Windows Binary EnrichedHeatmap_1.9.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) EnrichedHeatmap_1.9.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/EnrichedHeatmap
Package Short Url http://bioconductor.org/packages/EnrichedHeatmap/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive

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