GOstats

Tools for manipulating GO and microarrays.

Bioconductor version: Release (2.14)

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOstats")

Citation (from within R, enter citation("GOstats")):

Documentation

PDF Hypergeometric tests for less common model organisms
PDF R Script Hypergeometric Tests Using GOstats
PDF R Script Visualizing Data Using GOstats
PDF   Reference Manual

Details

biocViews Annotation, GO, MultipleComparison, Software
Version 2.30.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License Artistic-2.0
Depends R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.3.26), graph
Imports AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), methods, stats, AnnotationForge
Suggests hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
System Requirements
URL
Depends On Me attract, MineICA, RDAVIDWebService
Imports Me affycoretools, attract, categoryCompare, ProCoNA, ReportingTools
Suggests Me BiocCaseStudies, Category, eisa, fastLiquidAssociation, GSEAlm, HTSanalyzeR, interactiveDisplay, MineICA, MLP, MmPalateMiRNA, neaGUI, oneChannelGUI, phenoDist, safe

Package Downloads

Package Source GOstats_2.30.0.tar.gz
Windows Binary GOstats_2.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GOstats_2.30.0.tgz
Mac OS X 10.9 (Mavericks) GOstats_2.30.0.tgz
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