LINC

DOI: 10.18129/B9.bioc.LINC    

co-expression of lincRNAs and protein-coding genes

Bioconductor version: Release (3.8)

This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.

Author: Manuel Goepferich, Carl Herrmann

Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>

Citation (from within R, enter citation("LINC")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("LINC", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LINC")

 

HTML R Script LINC - Co-Expression Analysis of lincRNAs
PDF   Reference Manual
Text   NEWS

Details

biocViews BiologicalQuestion, GeneExpression, GeneRegulation, Software
Version 1.10.0
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License Artistic-2.0
Depends R (>= 3.3.1), methods, stats
Imports Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA
LinkingTo Rcpp
Suggests RUnit, BiocGenerics, knitr, biomaRt
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LINC_1.10.0.tar.gz
Windows Binary LINC_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) LINC_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LINC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LINC
Package Short Url http://bioconductor.org/packages/LINC/
Package Downloads Report Download Stats

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