LoomExperiment

DOI: 10.18129/B9.bioc.LoomExperiment    

LoomExperiment container

Bioconductor version: Release (3.8)

The LoomExperiment class provide a means to easily convert Bioconductor's "Experiment" classes to loom files and vice versa.

Author: Martin Morgan, Daniel Van Twisk

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("LoomExperiment")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("LoomExperiment", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LoomExperiment")

 

HTML R Script An introduction to the LoomExperiment class
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Infrastructure, SingleCell, Software
Version 1.0.1
License Artistic-2.0
Depends R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, rtracklayer
Imports DelayedArray, GenomicRanges, HDF5Array, stats, utils
LinkingTo
Suggests testthat, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LoomExperiment_1.0.1.tar.gz
Windows Binary LoomExperiment_1.0.1.zip
Mac OS X 10.11 (El Capitan) LoomExperiment_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/LoomExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LoomExperiment
Package Short Url http://bioconductor.org/packages/LoomExperiment/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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