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MBAmethyl

Model-based analysis of DNA methylation data


Bioconductor version: Release (3.18)

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

Author: Tao Wang, Mengjie Chen

Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>

Citation (from within R, enter citation("MBAmethyl")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MBAmethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBAmethyl")
MBAmethyl Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, MethylationArray, Software
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 2.15)
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MBAmethyl_1.36.0.tar.gz
Windows Binary MBAmethyl_1.36.0.zip
macOS Binary (x86_64) MBAmethyl_1.36.0.tgz
macOS Binary (arm64) MBAmethyl_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MBAmethyl
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MBAmethyl
Bioc Package Browser https://code.bioconductor.org/browse/MBAmethyl/
Package Short Url https://bioconductor.org/packages/MBAmethyl/
Package Downloads Report Download Stats