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Segmentation of Bis-seq data

Bioconductor version: Release (3.19)

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at>

Citation (from within R, enter citation("MethylSeekR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

MethylSeekR PDF R Script
Reference Manual PDF


biocViews DNAMethylation, MethylSeq, Sequencing, Software
Version 1.44.0
In Bioconductor since BioC 2.12 (R-3.0) (11.5 years)
License GPL (>=2)
Depends rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
System Requirements
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Suggests BSgenome.Hsapiens.UCSC.hg18
Linking To
Depends On Me
Imports Me
Suggests Me methylPipe, RnBeads
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethylSeekR_1.44.0.tar.gz
Windows Binary
macOS Binary (x86_64) MethylSeekR_1.44.0.tgz
macOS Binary (arm64) MethylSeekR_1.44.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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Old Source Packages for BioC 3.19 Source Archive