MiChip

DOI: 10.18129/B9.bioc.MiChip    

MiChip Parsing and Summarizing Functions

Bioconductor version: Release (3.8)

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

Author: Jonathon Blake <blake at embl.de>

Maintainer: Jonathon Blake <blake at embl.de>

Citation (from within R, enter citation("MiChip")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MiChip", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiChip")

 

PDF R Script MiChip miRNA Microarray Processing
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Software
Version 1.36.0
In Bioconductor since BioC 2.5 (R-2.10) (9 years)
License GPL (>= 2)
Depends R (>= 2.3.0), Biobase
Imports Biobase
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MiChip_1.36.0.tar.gz
Windows Binary MiChip_1.36.0.zip
Mac OS X 10.11 (El Capitan) MiChip_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MiChip
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MiChip
Package Short Url http://bioconductor.org/packages/MiChip/
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