OTUbase

DOI: 10.18129/B9.bioc.OTUbase    

Provides structure and functions for the analysis of OTU data

Bioconductor version: Release (3.8)

Provides a platform for Operational Taxonomic Unit based analysis

Author: Daniel Beck, Matt Settles, and James A. Foster

Maintainer: Daniel Beck <danlbek at gmail.com>

Citation (from within R, enter citation("OTUbase")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("OTUbase", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OTUbase")

 

PDF R Script An introduction to OTUbase
PDF   Reference Manual

Details

biocViews DataImport, Sequencing, Software
Version 1.32.0
In Bioconductor since BioC 2.7 (R-2.12) (8 years)
License Artistic-2.0
Depends R (>= 2.9.0), methods, S4Vectors, IRanges, ShortRead(>= 1.23.15), Biobase, vegan
Imports Biostrings
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me mcaGUI
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OTUbase_1.32.0.tar.gz
Windows Binary OTUbase_1.32.0.zip
Mac OS X 10.11 (El Capitan) OTUbase_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OTUbase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OTUbase
Package Short Url http://bioconductor.org/packages/OTUbase/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: