Similarities of Ordered Gene Lists

Bioconductor version: Release (3.19)

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Citation (from within R, enter citation("OrderedList")):


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Similarities of Ordered Gene Lists PDF R Script
Reference Manual PDF


biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.76.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License GPL (>= 2)
Depends R (>= 3.6.1), Biobase, twilight
Imports methods
System Requirements
URL http://compdiag.molgen.mpg.de/software/OrderedList.shtml
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