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REBET

The subREgion-based BurdEn Test (REBET)


Bioconductor version: Release (3.18)

There is an increasing focus to investigate the association between rare variants and diseases. The REBET package implements the subREgion-based BurdEn Test which is a powerful burden test that simultaneously identifies susceptibility loci and sub-regions.

Author: Bill Wheeler [cre], Bin Zhu [aut], Lisa Mirabello [ctb], Nilanjan Chatterjee [ctb]

Maintainer: Bill Wheeler <wheelerb at imsweb.com>

Citation (from within R, enter citation("REBET")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("REBET")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("REBET")
REBET Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews SNP, Software, VariantAnnotation
Version 1.20.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-2
Depends ASSET
Imports stats, utils
System Requirements
URL
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Suggests RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package REBET_1.20.0.tar.gz
Windows Binary REBET_1.20.0.zip
macOS Binary (x86_64) REBET_1.20.0.tgz
macOS Binary (arm64) REBET_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/REBET
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/REBET
Bioc Package Browser https://code.bioconductor.org/browse/REBET/
Package Short Url https://bioconductor.org/packages/REBET/
Package Downloads Report Download Stats