RTNduals

DOI: 10.18129/B9.bioc.RTNduals    

Analysis of co-regulation and inference of 'dual regulons'

Bioconductor version: Release (3.8)

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>

Citation (from within R, enter citation("RTNduals")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RTNduals", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTNduals")

 

HTML R Script RTNduals: analysis of co-regulation and inference of dual regulons.
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version 1.6.0
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License Artistic-2.0
Depends R (>= 3.5), RTN(>= 2.4.5), methods
Imports graphics, grDevices, stats, utils
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me RTNsurvival
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTNduals_1.6.0.tar.gz
Windows Binary RTNduals_1.6.0.zip
Mac OS X 10.11 (El Capitan) RTNduals_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RTNduals
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTNduals
Package Short Url http://bioconductor.org/packages/RTNduals/
Package Downloads Report Download Stats

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