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Replicate oriented Visualization of a genomic region

Bioconductor version: Release (3.18)

RepViz enables the view of a genomic region in a simple and efficient way. RepViz allows simultaneous viewing of both intra- and intergroup variation in sequencing counts of the studied conditions, as well as their comparison to the output features (e.g. identified peaks) from user selected data analysis methods.The RepViz tool is primarily designed for chromatin data such as ChIP-seq and ATAC-seq, but can also be used with other sequencing data such as RNA-seq, or combinations of different types of genomic data.

Author: Thomas Faux, Kalle Rytkönen, Asta Laiho, Laura L. Elo

Maintainer: Thomas Faux, Asta Laiho <faux.thomas1 at gmail.com> <asta.laiho at utu.fi>

Citation (from within R, enter citation("RepViz")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

RepViz HTML R Script
Reference Manual PDF


biocViews ATACSeq, ChIPSeq, Coverage, GenomicVariation, Sequencing, Software, Visualization, WorkflowStep
Version 1.18.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 3.5.1), GenomicRanges(>= 1.30.0), Rsamtools(>= 1.34.1), IRanges(>= 2.14.0), biomaRt(>= 2.36.0), S4Vectors(>= 0.18.0), graphics, grDevices, utils
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Suggests rmarkdown, knitr, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RepViz_1.18.0.tar.gz
Windows Binary RepViz_1.18.0.zip
macOS Binary (x86_64) RepViz_1.18.0.tgz
macOS Binary (arm64) RepViz_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RepViz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RepViz
Bioc Package Browser https://code.bioconductor.org/browse/RepViz/
Package Short Url https://bioconductor.org/packages/RepViz/
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