SQUADD

DOI: 10.18129/B9.bioc.SQUADD    

Add-on of the SQUAD Software

Bioconductor version: Release (3.8)

This package SQUADD is a SQUAD add-on. It permits to generate SQUAD simulation matrix, prediction Heat-Map and Correlation Circle from PCA analysis.

Author: Martial Sankar, supervised by Christian Hardtke and Ioannis Xenarios

Maintainer: Martial Sankar <martial.sankar at unil.ch>

Citation (from within R, enter citation("SQUADD")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("SQUADD", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SQUADD")

 

PDF R Script SQUADD package
PDF R Script SQUADD package
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Network, Software, Visualization
Version 1.32.0
In Bioconductor since BioC 2.7 (R-2.12) (8 years)
License GPL (>=2)
Depends R (>= 2.11.0)
Imports graphics, grDevices, methods, RColorBrewer, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.unil.ch/dbmv/page21142_en.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SQUADD_1.32.0.tar.gz
Windows Binary SQUADD_1.32.0.zip
Mac OS X 10.11 (El Capitan) SQUADD_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SQUADD
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SQUADD
Package Short Url http://bioconductor.org/packages/SQUADD/
Package Downloads Report Download Stats

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