DOI: 10.18129/B9.bioc.TimeSeriesExperiment    

Analysis for short time-series data

Bioconductor version: Release (3.8)

Visualization and analysis toolbox for short time course data which includes dimensionality reduction, clustering, two-sample differential expression testing and gene ranking techniques. The package also provides methods for retrieving enriched pathways.

Author: Lan Huong Nguyen

Maintainer: Lan Huong Nguyen <nlhuong90 at gmail.com>

Citation (from within R, enter citation("TimeSeriesExperiment")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("TimeSeriesExperiment", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Clustering, DifferentialExpression, GeneExpression, Microbiome, Normalization, Pathways, PrincipalComponent, RNASeq, Sequencing, Software, TimeCourse, Transcription, Visualization
Version 1.0.0
License LGPL (>= 3)
Depends R (>= 3.5), S4Vectors(>= 0.19.23), SummarizedExperiment(>= 1.11.6)
Imports dynamicTreeCut, dplyr, edgeR, DESeq2, ggplot2 (>= 3.0.0), graphics, Hmisc, limma, methods, magrittr, proxy, stats, tibble, tidyr, vegan, viridis, utils
Suggests Biobase, BiocFileCache(>= 1.5.8), circlize, ComplexHeatmap, GO.db, grDevices, grid, knitr, org.Mm.eg.db, org.Hs.eg.db, MASS, RColorBrewer, rmarkdown, UpSetR
URL https://github.com/nlhuong/TimeSeriesExperiment
BugReports https://github.com/nlhuong/TimeSeriesExperiment/issues
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Follow Installation instructions to use this package in your R session.

Source Package TimeSeriesExperiment_1.0.0.tar.gz
Windows Binary TimeSeriesExperiment_1.0.0.zip
Mac OS X 10.11 (El Capitan) TimeSeriesExperiment_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TimeSeriesExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TimeSeriesExperiment
Package Short Url http://bioconductor.org/packages/TimeSeriesExperiment/
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