DOI: 10.18129/B9.bioc.aCGH    

Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: Release (3.8)

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Citation (from within R, enter citation("aCGH")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("aCGH", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script aCGH Overview
PDF   Reference Manual


biocViews CopyNumberVariation, DataImport, Genetics, Software
Version 1.60.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14 years)
License GPL-2
Depends R (>= 2.10), cluster, survival, multtest
Imports Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
Depends On Me CRImage
Imports Me ADaCGH2, rCGH, snapCGH
Suggests Me beadarraySNP
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aCGH_1.60.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) aCGH_1.60.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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