chimeraviz

DOI: 10.18129/B9.bioc.chimeraviz    

Visualization tools for gene fusions

Bioconductor version: Release (3.7)

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

Author: Stian Lågstad [aut, cre], Sen Zhao [ctb], Andreas M. Hoff [ctb], Bjarne Johannessen [ctb], Ole Christian Lingjærde [ctb], Rolf Skotheim [ctb]

Maintainer: Stian Lågstad <stianlagstad at gmail.com>

Citation (from within R, enter citation("chimeraviz")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chimeraviz")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chimeraviz")

 

HTML R Script chimeraviz
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Infrastructure, Software
Version 1.6.2
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License Artistic-2.0
Depends Biostrings, GenomicRanges, IRanges, Gviz, S4Vectors, ensembldb, AnnotationFilter, data.table
Imports methods, grid, Rsamtools, GenomeInfoDb, GenomicAlignments, RColorBrewer, graphics, AnnotationDbi, RCircos, org.Hs.eg.db, org.Mm.eg.db, rmarkdown, graph, Rgraphviz, DT, plyr, dplyr, BiocStyle, ArgumentCheck
LinkingTo
Suggests testthat, roxygen2, devtools, knitr, lintr
SystemRequirements bowtie, samtools, and egrep are required for some functionalities
Enhances
URL https://github.com/stianlagstad/chimeraviz
BugReports https://github.com/stianlagstad/chimeraviz/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chimeraviz_1.6.2.tar.gz
Windows Binary chimeraviz_1.6.2.zip
Mac OS X 10.11 (El Capitan) chimeraviz_1.6.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/chimeraviz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chimeraviz
Package Short Url http://bioconductor.org/packages/chimeraviz/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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