To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("doppelgangR")

In most cases, you don't need to download the package archive at all.

doppelgangR

DOI: 10.18129/B9.bioc.doppelgangR    

Identify likely duplicate samples from genomic or meta-data

Bioconductor version: Release (3.5)

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).

Author: Levi Waldron, Markus Riester, Marcel Ramos

Maintainer: Levi Waldron <lwaldron.research at gmail.com>

Citation (from within R, enter citation("doppelgangR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("doppelgangR")

Documentation

HTML R Script doppelgangR vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, Microarray, QualityControl, RNASeq, Software
Version 1.4.1
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License GPL (>=2.0)
Depends R (>= 3.3), Biobase, BiocParallel
Imports sva, impute, digest, mnormt, methods, grDevices, graphics, stats, utils
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, curatedOvarianData, ROCR, pROC, RUnit, simulatorZ, proxy
SystemRequirements
Enhances
URL https://github.com/lwaldron/doppelgangR
BugReports https://github.com/lwaldron/doppelgangR/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source doppelgangR_1.4.1.tar.gz
Windows Binary doppelgangR_1.4.1.zip
Mac OS X 10.11 (El Capitan) doppelgangR_1.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/doppelgangR
Package Short Url http://bioconductor.org/packages/doppelgangR/
Package Downloads Report Download Stats

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