epivizrStandalone
Run Epiviz Interactive Genomic Data Visualization App within R
Bioconductor version: Release (3.19)
This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.
Author: Hector Corrada Bravo, Jayaram Kancherla
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
citation("epivizrStandalone")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epivizrStandalone")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epivizrStandalone")
Introduction to epivizrStandalone | HTML |
Reference Manual | |
NEWS | Text |
LICENSE | Text |
Details
biocViews | GUI, Infrastructure, Software, Visualization |
Version | 1.32.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.2.3), epivizr(>= 2.3.6), methods |
Imports | git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors |
System Requirements | |
URL |
See More
Suggests | testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | scTreeViz |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | epivizrStandalone_1.32.0.tar.gz |
Windows Binary | epivizrStandalone_1.32.0.zip (64-bit only) |
macOS Binary (x86_64) | epivizrStandalone_1.32.0.tgz |
macOS Binary (arm64) | epivizrStandalone_1.32.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/epivizrStandalone |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epivizrStandalone |
Bioc Package Browser | https://code.bioconductor.org/browse/epivizrStandalone/ |
Package Short Url | https://bioconductor.org/packages/epivizrStandalone/ |
Package Downloads Report | Download Stats |