To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowPloidy")

In most cases, you don't need to download the package archive at all.

flowPloidy

DOI: 10.18129/B9.bioc.flowPloidy    

Analyze flow cytometer data to determine sample ploidy

Bioconductor version: Release (3.5)

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Author: Tyler Smith <tyler at plantarum.ca>

Maintainer: Tyler Smith <tyler at plantarum.ca>

Citation (from within R, enter citation("flowPloidy")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowPloidy")

Documentation

HTML R Script flowPloidy: FCM Histograms
HTML R Script flowPloidy: Getting Started
PDF   Reference Manual
Text   NEWS

Details

biocViews FlowCytometry, GUI, Regression, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License GPL-3
Depends R (>= 3.4)
Imports flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils
LinkingTo
Suggests flowPloidyData, testthat
SystemRequirements
Enhances
URL https://github.com/plantarum/flowPloidy
BugReports https://github.com/plantarum/flowPloidy/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source flowPloidy_1.2.0.tar.gz
Windows Binary flowPloidy_1.2.0.zip
Mac OS X 10.11 (El Capitan) flowPloidy_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowPloidy
Package Short Url http://bioconductor.org/packages/flowPloidy/
Package Downloads Report Download Stats

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