flowVS

DOI: 10.18129/B9.bioc.flowVS    

Variance stabilization in flow cytometry (and microarrays)

Bioconductor version: Release (3.8)

Per-channel variance stabilization from a collection of flow cytometry samples by Bertlett test for homogeneity of variances. The approach is applicable to microarrays data as well.

Author: Ariful Azad

Maintainer: Ariful Azad <azadcse at gmail.com>

Citation (from within R, enter citation("flowVS")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("flowVS", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowVS")

 

PDF R Script flowVS: Cell population matching and meta-clustering in Flow Cytometry
PDF   Reference Manual

Details

biocViews CellBasedAssays, FlowCytometry, Microarray, Software
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 3.2), methods, flowCore, flowViz, flowStats
Imports
LinkingTo
Suggests knitr, vsn
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowVS_1.14.0.tar.gz
Windows Binary flowVS_1.14.0.zip
Mac OS X 10.11 (El Capitan) flowVS_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowVS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowVS
Package Short Url http://bioconductor.org/packages/flowVS/
Package Downloads Report Download Stats

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