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heatmaps

Flexible Heatmaps for Functional Genomics and Sequence Features


Bioconductor version: Release (3.18)

This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.

Author: Malcolm Perry <mgperry32 at gmail.com>

Maintainer: Malcolm Perry <mgperry32 at gmail.com>

Citation (from within R, enter citation("heatmaps")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("heatmaps")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("heatmaps")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews FunctionalGenomics, SequenceMatching, Software, Visualization
Version 1.26.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb
System Requirements
URL
See More
Suggests BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me seqArchRplus
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package heatmaps_1.26.0.tar.gz
Windows Binary heatmaps_1.26.0.zip
macOS Binary (x86_64) heatmaps_1.26.0.tgz
macOS Binary (arm64) heatmaps_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/heatmaps
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/heatmaps
Bioc Package Browser https://code.bioconductor.org/browse/heatmaps/
Package Short Url https://bioconductor.org/packages/heatmaps/
Package Downloads Report Download Stats