heatmaps

This is the released version of heatmaps; for the devel version, see heatmaps.

Flexible Heatmaps for Functional Genomics and Sequence Features


Bioconductor version: Release (3.20)

This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.

Author: Malcolm Perry <mgperry32 at gmail.com>

Maintainer: Malcolm Perry <mgperry32 at gmail.com>

Citation (from within R, enter citation("heatmaps")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("heatmaps")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("heatmaps")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews FunctionalGenomics, SequenceMatching, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 3.5 (R-3.4) (7.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb
System Requirements
URL
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Suggests BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package heatmaps_1.30.0.tar.gz
Windows Binary (x86_64) heatmaps_1.30.0.zip (64-bit only)
macOS Binary (x86_64) heatmaps_1.30.0.tgz
macOS Binary (arm64) heatmaps_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/heatmaps
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/heatmaps
Bioc Package Browser https://code.bioconductor.org/browse/heatmaps/
Package Short Url https://bioconductor.org/packages/heatmaps/
Package Downloads Report Download Stats