hierinf

DOI: 10.18129/B9.bioc.hierinf    

Hierarchical Inference

Bioconductor version: Release (3.8)

Tools to perform hierarchical inference for one or multiple studies / data sets based on high-dimensional multivariate (generalised) linear models. A possible application is to perform hierarchical inference for GWA studies to find significant groups or single SNPs (if the signal is strong) in a data-driven and automated procedure. The method is based on an efficient hierarchical multiple testing correction and controls the FWER. The functions can easily be run in parallel.

Author: Claude Renaux [aut, cre], Laura Buzdugan [aut], Markus Kalisch [aut], Peter B├╝hlmann [aut]

Maintainer: Claude Renaux <renaux at stat.math.ethz.ch>

Citation (from within R, enter citation("hierinf")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("hierinf", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hierinf")

 

PDF R Script vignette-hierinf.Rnw
PDF   Reference Manual
Text   LICENSE

Details

biocViews Clustering, GenomeWideAssociation, LinkageDisequilibrium, Regression, SNP, Software
Version 1.0.0
License GPL-3 | file LICENSE
Depends R (>= 3.5.0)
Imports fmsb, glmnet, methods, parallel, stats
LinkingTo
Suggests knitr, MASS, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hierinf_1.0.0.tar.gz
Windows Binary hierinf_1.0.0.zip
Mac OS X 10.11 (El Capitan) hierinf_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hierinf
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hierinf
Package Short Url http://bioconductor.org/packages/hierinf/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: