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iASeq

iASeq: integrating multiple sequencing datasets for detecting allele-specific events


Bioconductor version: Release (3.18)

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

Citation (from within R, enter citation("iASeq")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iASeq")
iASeq Vignette PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeq, ImmunoOncology, RNASeq, SNP, Software
Version 1.46.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License GPL-2
Depends R (>= 2.14.1)
Imports graphics, grDevices
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iASeq_1.46.0.tar.gz
Windows Binary iASeq_1.46.0.zip (64-bit only)
macOS Binary (x86_64) iASeq_1.46.0.tgz
macOS Binary (arm64) iASeq_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iASeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iASeq
Bioc Package Browser https://code.bioconductor.org/browse/iASeq/
Package Short Url https://bioconductor.org/packages/iASeq/
Package Downloads Report Download Stats