Welcome to the new bioconductor.org!


Out-of-memory dense and sparse signal arrays

Bioconductor version: Release (3.18)

Memory-efficient file-based data structures for dense and sparse vectors, matrices, arrays, and lists with applications to nonuniformly sampled signals and spectra.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

1. Matter 2: User guide for flexible out-of-memory data structures HTML R Script
Reference Manual PDF


biocViews DataImport, DataRepresentation, DimensionReduction, Infrastructure, Preprocessing, Software
Version 2.4.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends R (>= 4.0), BiocParallel, Matrix, methods
Imports BiocGenerics, ProtGenerics, digest, irlba, biglm, stats, stats4, graphics, grDevices, utils
System Requirements
URL https://github.com/kuwisdelu/matter
Bug Reports https://github.com/kuwisdelu/matter/issues
See More
Suggests BiocStyle, knitr, testthat
Linking To
Depends On Me CardinalIO
Imports Me Cardinal
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package matter_2.4.0.tar.gz
Windows Binary matter_2.4.0.zip (64-bit only)
macOS Binary (x86_64) matter_2.4.0.tgz
macOS Binary (arm64) matter_2.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/matter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/matter
Bioc Package Browser https://code.bioconductor.org/browse/matter/
Package Short Url https://bioconductor.org/packages/matter/
Package Downloads Report Download Stats