meshr
Tools for conducting enrichment analysis of MeSH
Bioconductor version: Release (3.20)
A set of annotation maps describing the entire MeSH assembled using data from MeSH.
Author: Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
Citation (from within R, enter
citation("meshr")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("meshr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("meshr")
AnnotationHub-style MeSH ORA Framework from BioC 3.14 | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Software, Statistics |
Version | 2.12.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
License | Artistic-2.0 |
Depends | R (>= 4.1.0) |
Imports | markdown, rmarkdown, BiocStyle, knitr, methods, stats, utils, fdrtool, MeSHDbi, Category, S4Vectors, BiocGenerics, RSQLite |
System Requirements | |
URL | |
Bug Reports | https://github.com/rikenbit/meshr/issues |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | scTensor |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | meshr_2.12.0.tar.gz |
Windows Binary (x86_64) | meshr_2.12.0.zip (64-bit only) |
macOS Binary (x86_64) | meshr_2.12.0.tgz |
macOS Binary (arm64) | meshr_2.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/meshr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/meshr |
Bioc Package Browser | https://code.bioconductor.org/browse/meshr/ |
Package Short Url | https://bioconductor.org/packages/meshr/ |
Package Downloads Report | Download Stats |