metabomxtr

DOI: 10.18129/B9.bioc.metabomxtr    

A package to run mixture models for truncated metabolomics data with normal or lognormal distributions

Bioconductor version: Release (3.8)

The functions in this package return optimized parameter estimates and log likelihoods for mixture models of truncated data with normal or lognormal distributions.

Author: Michael Nodzenski, Anna Reisetter, Denise Scholtens

Maintainer: Michael Nodzenski <michael.nodzenski at northwestern.edu>

Citation (from within R, enter citation("metabomxtr")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("metabomxtr", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metabomxtr")

 

PDF R Script metabomxtr
PDF R Script mixnorm
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Metabolomics, Software
Version 1.16.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License GPL-2
Depends methods, Biobase
Imports optimx, Formula, plyr, multtest, BiocParallel, ggplot2
LinkingTo
Suggests xtable, reshape2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metabomxtr_1.16.0.tar.gz
Windows Binary metabomxtr_1.16.0.zip
Mac OS X 10.11 (El Capitan) metabomxtr_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/metabomxtr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metabomxtr
Package Short Url http://bioconductor.org/packages/metabomxtr/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: