mirIntegrator

DOI: 10.18129/B9.bioc.mirIntegrator    

Integrating microRNA expression into signaling pathways for pathway analysis

Bioconductor version: Release (3.8)

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

Author: Diana Diaz <dmd at wayne dot edu>

Maintainer: Diana Diaz <dmd at wayne.edu>

Citation (from within R, enter citation("mirIntegrator")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("mirIntegrator", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirIntegrator")

 

PDF R Script mirIntegrator Overview
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphAndNetwork, KEGG, Microarray, Network, Pathways, Software
Version 1.12.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL (>=3)
Depends R (>= 3.3)
Imports graph, ROntoTools, ggplot2, org.Hs.eg.db, AnnotationDbi, Rgraphviz
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL http://datad.github.io/mirIntegrator/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mirIntegrator_1.12.0.tar.gz
Windows Binary mirIntegrator_1.12.0.zip
Mac OS X 10.11 (El Capitan) mirIntegrator_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mirIntegrator
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mirIntegrator
Package Short Url http://bioconductor.org/packages/mirIntegrator/
Package Downloads Report Download Stats

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