muscle

DOI: 10.18129/B9.bioc.muscle    

Multiple Sequence Alignment with MUSCLE

Bioconductor version: Release (3.8)

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>

Citation (from within R, enter citation("muscle")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("muscle", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscle")

 

PDF R Script A guide to using muscle
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software
Version 3.24.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Unlimited
Depends Biostrings
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.drive5.com/muscle/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package muscle_3.24.0.tar.gz
Windows Binary muscle_3.24.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) muscle_3.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/muscle
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/muscle
Package Short Url http://bioconductor.org/packages/muscle/
Package Downloads Report Download Stats

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