netbenchmark

DOI: 10.18129/B9.bioc.netbenchmark    

Benchmarking of several gene network inference methods

Bioconductor version: Release (3.8)

This package implements a benchmarking of several gene network inference algorithms from gene expression data.

Author: Pau Bellot, Catharina Olsen, Patrick Meyer

Maintainer: Pau Bellot <pau.bellot at upc.edu>

Citation (from within R, enter citation("netbenchmark")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("netbenchmark", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netbenchmark")

 

HTML R Script Netbenchmark
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License CC BY-NC-SA 4.0
Depends grndata(>= 0.99.3)
Imports Rcpp (>= 0.11.0), minet, GENIE3, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool
LinkingTo Rcpp
Suggests RUnit, BiocGenerics, knitr, graph
SystemRequirements
Enhances
URL https://imatge.upc.edu/netbenchmark/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netbenchmark_1.14.0.tar.gz
Windows Binary netbenchmark_1.14.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) netbenchmark_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/netbenchmark
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netbenchmark
Package Short Url http://bioconductor.org/packages/netbenchmark/
Package Downloads Report Download Stats

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