openPrimeRui

DOI: 10.18129/B9.bioc.openPrimeRui    

Shiny Application for Multiplex PCR Primer Design and Analysis

Bioconductor version: Release (3.8)

A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.

Author: Matthias Döring [aut, cre], Nico Pfeifer [aut]

Maintainer: Matthias Döring <mdoering at mpi-inf.mpg.de>

Citation (from within R, enter citation("openPrimeRui")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("openPrimeRui", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("openPrimeRui")

 

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Details

biocViews Software, Technology
Version 1.4.1
License GPL-2
Depends R (>= 3.4.0), openPrimeR(>= 0.99.0)
Imports shiny (>= 1.0.2), shinyjs (>= 0.9), shinyBS (>= 0.61), DT (>= 0.2), rmarkdown (>= 1.0)
LinkingTo
Suggests knitr (>= 1.13)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package openPrimeRui_1.4.1.tar.gz
Windows Binary openPrimeRui_1.4.1.zip
Mac OS X 10.11 (El Capitan) openPrimeRui_1.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/openPrimeRui
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/openPrimeRui
Package Short Url http://bioconductor.org/packages/openPrimeRui/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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