pathVar
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
Methods to Find Pathways with Significantly Different Variability
Bioconductor version: Release (3.19)
This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.
Author: Laurence de Torrente, Samuel Zimmerman, Jessica Mar
Maintainer: Samuel Zimmerman <samuel.e.zimmerman at gmail.com>
citation("pathVar")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathVar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | GeneSetEnrichment, GeneticVariability, Pathways, Software |
Version | 1.34.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (9 years) |
License | LGPL (>= 2.0) |
Depends | R (>= 3.3.0), methods, ggplot2, gridExtra |
Imports | EMT, mclust, Matching, data.table, stats, grDevices, graphics, utils |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | pathVar_1.34.0.zip (64-bit only) |
macOS Binary (x86_64) | pathVar_1.34.0.tgz |
macOS Binary (arm64) | pathVar_1.34.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pathVar |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pathVar |
Package Short Url | https://bioconductor.org/packages/pathVar/ |
Package Downloads Report | Download Stats |