plrs

DOI: 10.18129/B9.bioc.plrs    

Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

Bioconductor version: Release (3.8)

The present package implements a flexible framework for modeling the relationship between DNA copy number and gene expression data using Piecewise Linear Regression Splines (PLRS).

Author: Gwenael G.R. Leday

Maintainer: Gwenael G.R. Leday to <gleday at few.vu.nl>

Citation (from within R, enter citation("plrs")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("plrs", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plrs")

 

PDF R Script plrs
PDF   Reference Manual

Details

biocViews Regression, Software
Version 1.22.0
In Bioconductor since BioC 2.12 (R-3.0) (5.5 years)
License GPL (>=2.0)
Depends R (>= 2.10), Biobase
Imports BiocGenerics, CGHbase, graphics, grDevices, ic.infer, marray, methods, quadprog, Rcsdp, stats, stats4, utils
LinkingTo
Suggests mvtnorm, methods
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plrs_1.22.0.tar.gz
Windows Binary plrs_1.22.0.zip
Mac OS X 10.11 (El Capitan) plrs_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/plrs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plrs
Package Short Url http://bioconductor.org/packages/plrs/
Package Downloads Report Download Stats

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