PharmacOGenomics Ontology Support

Bioconductor version: Release (3.19)

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pogos")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology HTML R Script
Reference Manual PDF


biocViews ImmunoOncology, Pharmacogenomics, PooledScreens, Software
Version 1.24.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1)
Imports methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics
System Requirements
See More
Suggests knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle
Linking To
Depends On Me
Imports Me
Suggests Me BiocOncoTK
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pogos_1.24.0.tar.gz
Windows Binary pogos_1.24.0.zip
macOS Binary (x86_64) pogos_1.24.0.tgz
macOS Binary (arm64) pogos_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pogos
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pogos
Bioc Package Browser https://code.bioconductor.org/browse/pogos/
Package Short Url https://bioconductor.org/packages/pogos/
Package Downloads Report Download Stats