powerTCR

DOI: 10.18129/B9.bioc.powerTCR    

Model-Based Comparative Analysis of the TCR Repertoire

Bioconductor version: Release (3.8)

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

Author: Hillary Koch

Maintainer: Hillary Koch <hillary.koch01 at gmail.com>

Citation (from within R, enter citation("powerTCR")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("powerTCR", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("powerTCR")

 

HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS

Details

biocViews BiomedicalInformatics, Clustering, Software
Version 1.2.0
License Artistic-2.0
Depends
Imports cubature, doParallel, evmix, foreach, magrittr, methods, parallel, purrr, stats, tcR, truncdist, vegan, VGAM
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package powerTCR_1.2.0.tar.gz
Windows Binary powerTCR_1.2.0.zip
Mac OS X 10.11 (El Capitan) powerTCR_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/powerTCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/powerTCR
Package Short Url http://bioconductor.org/packages/powerTCR/
Package Downloads Report Download Stats

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