rols

DOI: 10.18129/B9.bioc.rols    

An R interface to the Ontology Lookup Service

Bioconductor version: Release (3.8)

The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

Author: Laurent Gatto <lg390 at cam.ac.uk>, with contributions from Tiago Chedraoui Silva.

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("rols")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rols", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rols")

 

HTML R Script An R interface to the Ontology Lookup Service
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GO, MassSpectrometry, Software
Version 2.10.0
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License GPL-2
Depends methods
Imports httr, progress, jsonlite, utils, Biobase, BiocGenerics(>= 0.23.1)
LinkingTo
Suggests GO.db, knitr (>= 1.1.0), BiocStyle(>= 2.5.19), testthat, lubridate, DT, rmarkdown
SystemRequirements
Enhances
URL http://lgatto.github.com/rols/
BugReports https://github.com/lgatto/rols/issues
Depends On Me proteomics
Imports Me
Suggests Me MSnbase, RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rols_2.10.0.tar.gz
Windows Binary rols_2.10.0.zip
Mac OS X 10.11 (El Capitan) rols_2.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rols
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rols
Package Short Url http://bioconductor.org/packages/rols/
Package Downloads Report Download Stats

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