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rpx

R Interface to the ProteomeXchange Repository


Bioconductor version: Release (3.18)

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rpx")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rpx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rpx")
An R interface to the ProteomeXchange repository HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version 2.10.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-2
Depends R (>= 3.5.0), methods
Imports BiocFileCache, jsonlite, xml2, RCurl, curl, utils
System Requirements
URL https://github.com/lgatto/rpx
Bug Reports https://github.com/lgatto/rpx/issues
See More
Suggests Biostrings, BiocStyle, testthat, knitr, tibble, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me MsExperiment, MSnbase, PSMatch, RforProteomics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rpx_2.10.0.tar.gz
Windows Binary rpx_2.10.0.zip
macOS Binary (x86_64) rpx_2.10.0.tgz
macOS Binary (arm64) rpx_2.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rpx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rpx
Bioc Package Browser https://code.bioconductor.org/browse/rpx/
Package Short Url https://bioconductor.org/packages/rpx/
Package Downloads Report Download Stats