sesame

DOI: 10.18129/B9.bioc.sesame    

Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Bioconductor version: Release (3.8)

Tools For analyzing Illumina Infinium DNA methylation arrays.

Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb]

Maintainer: Wanding Zhou <zhouwanding at gmail.com>

Citation (from within R, enter citation("sesame")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sesame", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sesame")

 

HTML R Script SeSAMe User Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, MethylationArray, Preprocessing, QualityControl, Software
Version 1.0.0
License Artistic-2.0
Depends R (>= 3.5), sesameData, methods
Imports R6, grDevices, utils, illuminaio, MASS, GenomicRanges, IRanges, grid, preprocessCore, stats, S4Vectors, randomForest, wheatmap, ggplot2, parallel, DNAcopy
LinkingTo
Suggests scales, knitr, rmarkdown, testthat, minfi, SummarizedExperiment, FlowSorted.CordBloodNorway.450k
SystemRequirements
Enhances
URL https://github.com/zwdzwd/sesame
BugReports https://github.com/zwdzwd/sesame/issues
Depends On Me
Imports Me
Suggests Me sesameData
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sesame_1.0.0.tar.gz
Windows Binary sesame_1.0.0.zip
Mac OS X 10.11 (El Capitan) sesame_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sesame
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sesame
Package Short Url http://bioconductor.org/packages/sesame/
Package Downloads Report Download Stats

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